About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45506567_45506737_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45506567 - 45506737
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTATTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTTTAATAAACA
Flanking Amino Acid:
LGDVFSPVRDDVIAGKANED
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
78
0.63
0.9
73.1
37
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
51
0.03
2.1
70.69
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016970
45499949 - 45522350
22402