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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45518860_45520352_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45518860 - 45520352
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATTATTGATT
Flanking Amino Acid:
PAPLFEIAEGAKQTCVSLNS
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.8
82.2
28.1
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
58.4
0.35
1.6
74.62
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016970
45499949 - 45522350
22402