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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45520448_45522206_R

Intron Information:

Intron Rank:
1
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
45520448 - 45522206
Intron Length:
1759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTTGTGACTAAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CGGTCCATAACT
Flanking Amino Acid:
LVSSLCWASNNSFLVTASAV
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.2
57.8
41.9
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
53.7
0.08
1.2
56.7
42.3
Minor 5ss
96.3
1.56
0.7
91.7
17.5
Minor BPS
65.6
0.57
1.7
77.78
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016970
45499949 - 45522350
22402