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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45619196_45619311_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45619196 - 45619311
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATG
5'SS Class:
strong_major
3'SS Sequence:
TTATATCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTATATCAATT
Flanking Amino Acid:
AVEFVTNFLQAQDDPRWKKA
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.6
41.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
64.9
0.33
1
64.8
41
Minor 5ss
43.1
-0.8
2.9
57.5
46.8
Minor BPS
54.7
0.23
1.8
78.04
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002309
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002319
45616510 - 45640896
24387