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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45623344_45623434_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
45623344 - 45623434
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTTGTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTTAT
U12 Branch Point Sequence:
GAGCACATAACA
Flanking Amino Acid:
RKIFREATLKMSVMIFKRAV
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
61.2
0.28
1.2
53
42.8
Major PPT
73.6
0.53
1
68.2
42.3
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
48.1
-0.1
1.8
57.6
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002309
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002319
45616510 - 45640896
24387