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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45625522_45627398_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
45625522 - 45627398
Intron Length:
1877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACCGCAG
5'SS Class:
weak_major
3'SS Sequence:
TTATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTATATTAATT
Flanking Amino Acid:
QENFCWLIYNGTIHIYTICR
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.3
44.3
44.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.94
0.7
87.7
29.5
Minor 5ss
34.7
-1.7
3.5
43.6
46
Minor BPS
62.3
0.46
1.6
78.52
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002309
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002319
45616510 - 45640896
24387