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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45634915_45639667_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45634915 - 45639667
Intron Length:
4753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
CCTGTATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTCTCCTGTATT
Flanking Amino Acid:
EPQRHDLQRRGANTLFNIWN
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
63
37.3
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
76.1
0.59
0.8
73.4
36.1
Minor 5ss
28.7
-2.4
3.7
32.9
42.5
Minor BPS
61.7
0.45
1.8
80.71
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002309
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002319
45616510 - 45640896
24387