Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4566244_4568827_F

Intron Information:

Intron Rank:

134933

Intron Class:

major

Intron Phase:

Intron Coordinates:

4566244 - 4568827

Intron Length:

2584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTGAGTAGG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CAGCTTCTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

62.1

43.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

32.6

-2

2.8

43.3

43.7

Minor BPS

-0.1

1.6

58.3

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022585

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022798

4566047 - 4589539

23493