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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4568877_4583292_F

Intron Information:

Intron Rank:
134937
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
4568877 - 4583292
Intron Length:
14416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCATCTTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTCCCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
53.9
0.09
1.7
64.4
36.3
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
46.9
-0.1
2.1
70.76
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022585
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041045
4568462 - 4583338
14877