Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4568877_4589257_F

Intron Information:

Intron Rank:

134934

Intron Class:

major

Intron Phase:

Intron Coordinates:

4568877 - 4589257

Intron Length:

20381

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

AGATGTCCTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAGAT

U12 Branch Point Sequence:

ATTTATTTAGAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.8

83.1

28.6

Major BPS

79.2

0.72

Major PPT

68.5

0.42

63.3

43.3

Minor 5ss

33.3

-1.9

3.4

45.9

43.7

Minor BPS

0.23

1.8

76.9

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022585

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022798

4566047 - 4589539

23493