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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45698012_45702467_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45698012 - 45702467
Intron Length:
4456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TGTAATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
TIEENSSKDNGVSNNGRISY
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
79.8
35.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.6
0.67
0.9
72.5
42
Minor 5ss
43.1
-0.8
2.9
54.5
43.9
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
CDK17
Ensembl Gene ID:
ENSAPLG00000002462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002502
45697863 - 45753954
56092