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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45702507_45712441_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45702507 - 45712441
Intron Length:
9935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTGTGAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TCCTTGTGAATT
Flanking Amino Acid:
NNGRISYSKVQPIVKNGRPP
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
76.2
39.9
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
70.2
0.45
1
63.9
41.8
Minor 5ss
39.6
-1.2
3.4
53.7
43.8
Minor BPS
48.3
-0
2.1
67.49
44.2

Associated Gene:

Gene:
CDK17
Ensembl Gene ID:
ENSAPLG00000002462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002502
45697863 - 45753954
56092