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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45737336_45741321_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45737336 - 45741321
Intron Length:
3986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTTCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTTCATT
Flanking Amino Acid:
MSRRSRRASLSEIGFGKMET
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
100
1.24
0.5
100
0
Major PPT
90.5
0.91
0.7
85.9
26.9
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
62.2
0.46
1.7
80
36.6

Associated Gene:

Gene:
CDK17
Ensembl Gene ID:
ENSAPLG00000002462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030830
45697863 - 45752879
55017
ENSAPLT00000002502
45697863 - 45753954
56092