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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45743308_45743836_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45743308 - 45743836
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCACA
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
EGAPCTAIREVSLLKDLKHA
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.6
36.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
34.3
-1.8
2.8
41.2
44.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
CDK17
Ensembl Gene ID:
ENSAPLG00000002462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030830
45697863 - 45752879
55017
ENSAPLT00000002502
45697863 - 45753954
56092