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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45752599_45753397_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45752599 - 45753397
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTACATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATGAATTAATT
Flanking Amino Acid:
LGTRIHTLPESVSIFSLKEI
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
29.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.6
0.62
0.9
70.1
39.9
Minor 5ss
35.7
-1.6
3.5
47.5
42.5
Minor BPS
55.1
0.24
1.9
75.53
40.9

Associated Gene:

Gene:
CDK17
Ensembl Gene ID:
ENSAPLG00000002462
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002502
45697863 - 45753954
56092