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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45762706_45765733_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45762706 - 45765733
Intron Length:
3028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
RLQGPNTLFQFPTLLNGHIP
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.8
0.58
0.9
68.6
37.3
Minor 5ss
38.8
-1.3
3.4
58.1
46.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
ELK3
Ensembl Gene ID:
ENSAPLG00000002810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002842
45761968 - 45779311
17344