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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45765857_45769053_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45765857 - 45769053
Intron Length:
3197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATGCAT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
SLTPAFFTAQTPNGLLLTPS
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
49.8
-0
1.5
63.4
44.3
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
ELK3
Ensembl Gene ID:
ENSAPLG00000002810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002842
45761968 - 45779311
17344