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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45769849_45779102_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45769849 - 45779102
Intron Length:
9254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GCTTTTGTACTT
Flanking Amino Acid:
SRALRYYYDKNIIKKVIGQK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84.2
0.77
0.8
78.1
35.3
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
45.1
-0.2
2.1
62.87
42.6

Associated Gene:

Gene:
ELK3
Ensembl Gene ID:
ENSAPLG00000002810
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002842
45761968 - 45779311
17344