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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45837990_45838718_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45837990 - 45838718
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGGGG
5'SS Class:
major
3'SS Sequence:
TGCTTCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
ATTTGCTTCATT
Flanking Amino Acid:
RAGGGARRCLVLDTKDLQVF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
52.4
41.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
79.7
0.67
0.9
73.1
36
Minor 5ss
27.4
-2.6
3.7
34
44.2
Minor BPS
58.7
0.35
2.2
81.92
40.2

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843