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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45838850_45840910_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45838850 - 45840910
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
AACTCTCTGACT
Flanking Amino Acid:
LEITLPFELRRGQEAIIEIS
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
85.9
29.8
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
79.7
0.67
0.8
76
32.6
Minor 5ss
47.1
-0.3
2.7
68.3
42.6
Minor BPS
55.8
0.26
1.7
70.9
40

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843