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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45841581_45842345_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45841581 - 45842345
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATGAG
5'SS Class:
major
3'SS Sequence:
AACCTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GGTTGCACAACC
Flanking Amino Acid:
PAVKLTYYAEVSVPKELVAL
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
65.6
40.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.3
0.61
0.9
73.6
36
Minor 5ss
30
-2.3
3.4
39.1
46.7
Minor BPS
46.3
-0.3
2.2
61.68
42.9

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843