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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45844478_45844805_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45844478 - 45844805
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTATTAGAAACT
Flanking Amino Acid:
VDKSAYEFAETEAMLQIAED
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
83.5
0.75
0.9
81
36
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
43.4
-0.4
2.4
66.22
44.1

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843