About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45844947_45845203_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45844947 - 45845203
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
CTTGTCTTACCT
Flanking Amino Acid:
CLTFVTPTLLAGDRSLSNVI
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
85.9
0.81
0.7
84.8
30
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
61.9
0.45
1.8
78.66
44.1

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843