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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45846301_45846418_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45846301 - 45846418
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTATG
5'SS Class:
major
3'SS Sequence:
AATGTATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTGACATTATCA
Flanking Amino Acid:
LVTNKTWEHFWLNEGHTVYL
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.5
41.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
73.6
0.53
1
63.1
46.6
Minor 5ss
38.1
-1.3
3.1
47.3
42.8
Minor BPS
48.8
-0
1.9
61.19
44.6

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843