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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45846531_45847449_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45846531 - 45847449
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
ATCTTTGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
LGGWRELQNTIKTLGDTNPV
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.4
0.62
0.9
71.9
37.5
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843