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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45848847_45849730_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45848847 - 45849730
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AGAAACTTAAGT
Flanking Amino Acid:
CVALSQRWIKAKESDLGSFS
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
75
35.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79.9
0.67
0.8
77.7
30.7
Minor 5ss
30.7
-2.2
3.3
40.4
40
Minor BPS
49.9
0.07
1.9
66.4
43.3

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843