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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45850448_45851713_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45850448 - 45851713
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TGAAAAATAACA
Flanking Amino Acid:
NAITNSEIRFRWLRLCIQSK
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
44.6
-0.4
2
58.02
40

Associated Gene:

Gene:
LTA4H
Ensembl Gene ID:
ENSAPLG00000002921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003042
45837837 - 45852679
14843