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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45856092_45856397_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45856092 - 45856397
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
GTATCCCAAACT
Flanking Amino Acid:
LYSKYREPEQYISLDGNSLT
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
75.8
0.58
0.9
72.8
37.5
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
57.3
0.31
2
78.76
42.8

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053