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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45856650_45856746_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45856650 - 45856746
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACCC
Flanking Amino Acid:
VIERIVKEQKVVYGITTGFG
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
68.2
0.55
1.7
73.91
43.5

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053