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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45856814_45856999_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45856814 - 45856999
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
ARTVIPNSKLMELQVNLVRS
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.1
24.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.8
76.7
31.9
Minor 5ss
44.3
-0.6
2.9
62.8
42
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053