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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45857038_45857116_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45857038 - 45857116
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGAGA
5'SS Class:
major
3'SS Sequence:
ATTACTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAG
U12 Branch Point Sequence:
GAGCCCATTACT
Flanking Amino Acid:
QVNLVRSHSAGVGKPLTPER
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.6
42.7
Major BPS
50.8
0.02
1.4
49.1
38
Major PPT
77.4
0.62
1
73.7
41
Minor 5ss
37.2
-1.5
3.1
49.1
46.7
Minor BPS
48.2
-0
1.9
64.87
44.5

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053