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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45857243_45858746_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45857243 - 45858746
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAAGA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCTAACAGAAGT
Flanking Amino Acid:
TLQQVIEAFNASCLPYIPEK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
66.8
38.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
32.3
-2
3
37.4
41.9
Minor BPS
43
-0.4
2.1
63.84
45.6

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053