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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45858887_45860319_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45858887 - 45860319
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
AACTCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAAAC
Flanking Amino Acid:
PKSGWADAKYVLEAHGLRPI
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.3
81.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
74.7
0.56
0.9
68.4
36.5
Minor 5ss
45.3
-0.5
3.1
64.7
40
Minor BPS
74.2
0.74
1.6
85.42
31.9

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053