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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45861975_45862055_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45861975 - 45862055
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGTACT
5'SS Class:
major
3'SS Sequence:
TTTGTCTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTGTCTTACTA
Flanking Amino Acid:
LKGTTKAFDTDIHAVRPHKG
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
71.8
39.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
76.6
0.6
0.9
71.1
39.6
Minor 5ss
32
-2.1
3
43.6
43.6
Minor BPS
62.2
0.38
1.7
74.1
38.6

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053