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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45862902_45863790_F

Intron Information:

Intron Rank:
14
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
45862902 - 45863790
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATCTTTT
5'SS Class:
strong_minor
3'SS Sequence:
CCTCTCCTTAAAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGCCTTAACC
Flanking Amino Acid:
TEINSATDNPMVFAERAETI
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.3
64.8
41.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.8
0.47
1
70.3
28
Minor 5ss
87.3
1.25
1.3
93.7
19.8
Minor BPS
80.3
0.93
1.3
83.37
36.3

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053