Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45863857_45863942_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45863857 - 45863942

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTAAG

5'SS Class:

strong_major

3'SS Sequence:

ACATCTTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTTCCTGTCACC

Flanking Amino Acid:

GNFHGEYPAKALDYLAIGVH

Intron Amino Acid Position:

452

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

79.8

35.1

Major BPS

81.8

0.79

1.1

34.5

Major PPT

74.8

0.56

0.9

36.3

Minor 5ss

35.1

-1.7

2.7

42.1

44.6

Minor BPS

-0.1

2.4

71.26

40.4

Associated Gene:

Gene:

HAL

Ensembl Gene ID:

ENSAPLG00000003775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003899

45854855 - 45867907

13053