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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45865675_45866477_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45865675 - 45866477
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATTA
5'SS Class:
major
3'SS Sequence:
TGTGATTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCTGTTGTGATT
Flanking Amino Acid:
ALRVIEHVEQVLAIELLAAC
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
77.8
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.3
0.39
0.9
58.7
42.7
Minor 5ss
47.1
-0.3
2.9
65.1
46.1
Minor BPS
43.6
-0.4
2
57.67
40.5

Associated Gene:

Gene:
HAL
Ensembl Gene ID:
ENSAPLG00000003775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003899
45854855 - 45867907
13053