Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45866887_45872362_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45866887 - 45872362

Intron Length:

5476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTCT

5'SS Class:

strong_major

3'SS Sequence:

ATTTATTACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

GTTTTAGTAATG

Flanking Amino Acid:

QGDLVIINSSRTGQMGAVTD

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.2

29.4

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

0.56

69.6

39.9

Minor 5ss

48.9

-0.1

2.4

68.1

42.9

Minor BPS

47.6

-0.3

2.2

60.63

41.6

Associated Gene:

Gene:

AMDHD1

Ensembl Gene ID:

ENSAPLG00000003873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045854

45866677 - 45882138

15462