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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45871861_45872362_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45871861 - 45872362
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTCTTAAACA
Flanking Amino Acid:
QGDLVIINSSRWEHLIYQFG
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80
0.68
0.8
77.7
36.7
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
71.7
0.68
1.6
80.29
35.7

Associated Gene:

Gene:
AMDHD1
Ensembl Gene ID:
ENSAPLG00000003873
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003985
45871583 - 45882138
10556