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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45879924_45880805_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45879924 - 45880805
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TGTACCTTTACT
Flanking Amino Acid:
IDCTGKCVLPGLVDAHTHPV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
69.7
43.7
Major BPS
61.3
0.28
1
62
30.6
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
42
-0.9
3.1
49
47.2
Minor BPS
71.4
0.76
1.7
86.35
39

Associated Gene:

Gene:
AMDHD1
Ensembl Gene ID:
ENSAPLG00000003873
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045854
45866677 - 45882138
15462
ENSAPLT00000003985
45871583 - 45882138
10556