Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45886169_45886746_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45886169 - 45886746

Intron Length:

578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGGG

5'SS Class:

strong_major

3'SS Sequence:

GTTCTCTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTAAA

U12 Branch Point Sequence:

TTCTCTTTACAG

Flanking Amino Acid:

LSGHLGEVLIRCNNVLYIRG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

42.1

Major BPS

61.3

0.28

1.1

61.7

34.1

Major PPT

0.81

0.8

79.9

32.1

Minor 5ss

32.2

-2

3.1

41.1

45.2

Minor BPS

56.8

0.07

1.8

63.96

44.2

Associated Gene:

Gene:

SNRPF

Ensembl Gene ID:

ENSAPLG00000025869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043107

45886102 - 45887163

1062

ENSAPLT00000028192

45886102 - 45888933

2832