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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45886812_45886922_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45886812 - 45886922
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
TGCGCGGTAACT
Flanking Amino Acid:
VSVDGYMNMQLANTEEYIDG
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
69.5
0.44
1
68
37.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
44.9
-0.3
2.6
67.9
48.7

Associated Gene:

Gene:
SNRPF
Ensembl Gene ID:
ENSAPLG00000025869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043107
45886102 - 45887163
1062
ENSAPLT00000028192
45886102 - 45888933
2832