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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45887047_45888919_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
45887047 - 45888919
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCAAACCAT
5'SS Class:
major
3'SS Sequence:
TGTCCCCGCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACCG
Flanking Amino Acid:
EDPRNLPLNPKPFL
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
59.8
44.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
48.2
-0.1
1.7
53.3
36.7
Minor 5ss
30.3
-2.3
4.2
47.1
43
Minor BPS
42.2
-0.7
2.1
44.43
47.2

Associated Gene:

Gene:
SNRPF
Ensembl Gene ID:
ENSAPLG00000025869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028192
45886102 - 45888933
2832