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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45887049_45887160_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45887049 - 45887160
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
GGTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACCG
Flanking Amino Acid:
MSLPLNPKPFL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
59.2
39.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
66.5
0.37
0.9
58.7
38.3
Minor 5ss
24.2
-3
3.3
26.6
37.9
Minor BPS
42.2
-0.7
2.1
44.43
47.2

Associated Gene:

Gene:
SNRPF
Ensembl Gene ID:
ENSAPLG00000025869
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043107
45886102 - 45887163
1062