About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45924796_45944295_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45924796 - 45944295
Intron Length:
19500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GTGATCTGACCT
Flanking Amino Acid:
SSPFPCTGGEVHGKCMCKHN
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
78.7
0.65
0.8
70.3
36.3
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
48.4
-0
1.8
65.98
44.3

Associated Gene:

Gene:
NTN4
Ensembl Gene ID:
ENSAPLG00000004278
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022277
45920608 - 45956476
35869