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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45936950_45944295_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45936950 - 45944295
Intron Length:
7346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TGTTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GTGATCTGACCT
Flanking Amino Acid:
PVKAAGVFQVVHGKCMCKHN
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.5
37
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
78.7
0.65
0.8
70.3
36.3
Minor 5ss
35.1
-1.7
2.8
40.3
40.4
Minor BPS
48.4
-0
1.8
65.98
44.3

Associated Gene:

Gene:
NTN4
Ensembl Gene ID:
ENSAPLG00000004278
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004390
45920608 - 45957436
36829
ENSAPLT00000025743
45923710 - 45957436
33727