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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45945020_45950904_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45945020 - 45950904
Intron Length:
5885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAC
U12 Branch Point Sequence:
CAGACGTTCACT
Flanking Amino Acid:
KPFSAPDACKRKCECKEQVL
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.3
68.8
43.8
Major BPS
64.5
0.36
1.2
69.3
37.7
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
34.9
-1.7
2.9
40.5
38.8
Minor BPS
44.6
-0.3
2.4
61.37
48

Associated Gene:

Gene:
NTN4
Ensembl Gene ID:
ENSAPLG00000004278
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022277
45920608 - 45956476
35869
ENSAPLT00000004390
45920608 - 45957436
36829
ENSAPLT00000025743
45923710 - 45957436
33727