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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_45950974_45952442_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45950974 - 45952442
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTATCTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTATTTAATT
Flanking Amino Acid:
KVFCGMKYTYVIKTKILSAH
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.7
0.65
0.8
76.1
32.2
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
65
0.55
1.5
76.19
41.2

Associated Gene:

Gene:
NTN4
Ensembl Gene ID:
ENSAPLG00000004278
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025743
45923710 - 45957436
33727
ENSAPLT00000022277
45920608 - 45956476
35869
ENSAPLT00000004390
45920608 - 45957436
36829