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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46011079_46012325_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46011079 - 46012325
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGAATT
5'SS Class:
major
3'SS Sequence:
TGTTTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAAAT
Flanking Amino Acid:
KNFDVGHVPIRLPRAKHLLN
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
76.6
38.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.3
0.61
0.8
70.5
36.3
Minor 5ss
34.4
-1.8
3.3
49.3
46.6
Minor BPS
71.4
0.75
1.6
89.47
34.4

Associated Gene:

Gene:
METAP2
Ensembl Gene ID:
ENSAPLG00000004742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004925
46010826 - 46028289
17464