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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46014746_46015238_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46014746 - 46015238
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCCTTCAAA
Flanking Amino Acid:
EVEIDGKTYQVKPIRNLNGH
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.9
80.4
34
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69.4
0.44
1
72.2
31.5
Minor 5ss
31.1
-2.2
4.1
49.9
46.5
Minor BPS
71.3
0.66
1.8
84.76
35

Associated Gene:

Gene:
METAP2
Ensembl Gene ID:
ENSAPLG00000004742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004925
46010826 - 46028289
17464